Next Generation Sequencing Analysis Training Workshop

Permalink:

https://documents.egi.eu/document/2641

Document #:

EGI-doc-2641-v1

Document type:

Presentation

Submitted by:

Fotis E. Psomopoulos

Updated by:

Fotis E. Psomopoulos

Document Created:

05 Nov 2015, 16:22

Contents Revised:

05 Nov 2015, 16:22

Metadata Revised:

05 Nov 2015, 16:29

Abstract:

The Institute of Applied Biosciences (INAB/CERTH) and the Information Processing Laboratory (IPL/AUTH) co-organized this event titled:

“Bioinformatics Training Workshop on NGS Analysis: cross-domain data exploration”

The main goal of this workshop is to attract researchers from different fields in life sciences who are (a) actively using Next Generation Sequencing (NGS) data analysis workflows in their research, and (b) have limited experience in employing large scale computer systems or specifically EGI resources.

The event took place in the Lecture Room of the Institute of Applied Biosciences, CERTH, 6th Km Charilaou-Thermi Road, Thessaloniki, Greece on Wednesday, October 21st 2015, 09:30 to 17:00.

Files in Document:

• Chipster hands-on exercises (ChipsterExercises.pdf, 2.0 MB)
• Introduction to EGI and FedCloud (NGSEGI-CloudIntro.pdf, 4.9 MB)
• NGS Analysis Methods and Protocols (NGSAnalysisProtocolsAndMethods.pdf, 4.1 MB)
• NGS applications and methods (Argiriou - NGS Methods and Applications - small.pdf, 2.9 MB)
• Preparing and running an NGS experiment (PreparingNGSExperiments.pdf, 1.7 MB)

Topics:

• EGI
• Activities:User Engagement and Support

Authors:

• Fotis E. Psomopoulos

Keywords:

NGS Data Analysis Federated Cloud Chipster Virtual Machine